PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00073
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 301aa    MW: 34679 Da    PI: 7.4828
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00073genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.52.5e-30601723117
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaa.kskk 99 
                 g+kdrhsk++T +g+RdRR+Rls+ +a++++dLqd+LG+ ++sk i+WLlq+a+  ++ l+ +++++  +  + +s  +++n++ g   ++++    ++
  AA44G00073  60 GGKDRHSKVCTVRGLRDRRIRLSVMTAIQLYDLQDRLGLNQPSKVIDWLLQAAQNDVDLLPPLQFPPGFHQ-NYQSYPETNNNNLGlF-QSFDLgDCSS 156
                 78*************************************************************88888333.3333333333344442.3333324444 PP

         TCP 100 sqksaasalnlakesrak 117
                 s+k+++  l+l k ++ k
  AA44G00073 157 SRKESN--LDLEKGKSIK 172
                 444444..4444444333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.99961119IPR017887Transcription factor TCP subgroup
PfamPF036343.8E-2861174IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MIRSNSREHH EDEDNNKHHH HHHNIMNLNH EQQEHQQQQR RSWTTAFRNP RIVRVSRTFG  60
GKDRHSKVCT VRGLRDRRIR LSVMTAIQLY DLQDRLGLNQ PSKVIDWLLQ AAQNDVDLLP  120
PLQFPPGFHQ NYQSYPETNN NNLGLFQSFD LGDCSSSRKE SNLDLEKGKS IKFDNREHGF  180
DIDHHYFPNS TQSHKLYNNN NFSPATAYNS SSHQYDIGHL QQSLLDQSSN VTVAFSNVHH  240
HHHHTNINLN PPPAPPQQAS DESQAFPATM SSLFPTYPSF LGGGQLQLFG SNSNISKERD  300
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1866120155Putative transcription factor PCF6
5zkt_B1e-1866120155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00497DAPTransfer from AT5G08070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00073
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090313.17e-93PREDICTED: transcription factor TCP17-like
SwissprotQ9LEZ92e-86TCP17_ARATH; Transcription factor TCP17
TrEMBLA0A3P6A0R24e-87A0A3P6A0R2_BRACM; Uncharacterized protein
STRINGBostr.13129s0160.1.p2e-96(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.12e-77TCP domain protein 17
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]