PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00675
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 232aa    MW: 25985.8 Da    PI: 6.1486
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00675genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-192069255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  AA40G00675 20 RFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 69
                678******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-311976No hitNo description
PROSITE profilePS5103220.7322077IPR001471AP2/ERF domain
SMARTSM003807.6E-342083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-292177IPR001471AP2/ERF domain
PRINTSPR003672.6E-82132IPR001471AP2/ERF domain
PfamPF008474.3E-122169IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-212178IPR016177DNA-binding domain
PRINTSPR003672.6E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNTAPKSKKK QTQQEQVGTR FLGVRRRPWG RYAAEIRDPT TKERHWLGTF DTAEEAALAY  60
DRAARSMRGT RARTNFLYSD MPPSSSVTSI VSPDDPLPLA PPPSDHPPLP LPPPHVDEHD  120
HNKIQSPYLM MFNQYYSSTT DSPMLHQPPP SQVDSSYIFG GTPSTSYYCY SNSNNDLPPL  180
PSDLSNSYST SGATINMENS YFEADQYPHS PMFSRMPPVS DTLPEGFNYL GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-211876362ATERF1
3gcc_A6e-211876362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196895.13e-87ethylene-responsive transcription factor LEP
SwissprotQ9M6444e-89LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLD7M5X81e-86D7M5X8_ARALL; Putative uncharacterized protein
STRINGAT5G13910.11e-86(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-62ERF family protein