PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00678
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family RAV
Protein Properties Length: 319aa    MW: 36247.3 Da    PI: 10.1289
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00678genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.8e-114997155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s++kGV   + +grW A+I++      ++r++lg+f   ++Aa a++ a+++++g
  AA39G00678 49 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNLQQDAASAYDIAARRFRG 97
                79****9888.8*********3.....5*************************98 PP

2B3102.42.6e-32170269198
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 f+k+ tpsdv+k++rlv+pk++ae+h    +   +++ + led++g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++   ++el++ +
  AA39G00678 170 FEKTVTPSDVGKLNRLVIPKQYAEKHfplPLT-SNGVLINLEDLTGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVMFQRSTGLNRELFIDW 267
                 99*************************98444.4679*************************************************8766777788777 PP

                 E- CS
          B3  97 fr 98 
                  +
  AA39G00678 268 KS 269
                 65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-64997IPR001471AP2/ERF domain
CDDcd000186.77E-2449104No hitNo description
SuperFamilySSF541712.88E-1549104IPR016177DNA-binding domain
PROSITE profilePS5103218.49250105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1950104IPR001471AP2/ERF domain
SMARTSM003801.8E-2550111IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.5E-41164272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-33165272IPR015300DNA-binding pseudobarrel domain
CDDcd100179.70E-30169256No hitNo description
SMARTSM010191.0E-26170271IPR003340B3 DNA binding domain
PROSITE profilePS5086315.411170271IPR003340B3 DNA binding domain
PfamPF023623.1E-29170270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNESCSSSTN TSESPPPLRL SRLSSANSSV ILDIENGIET ESRNKLPSSK FKGVVPQPNG  60
RWGAQIYEKH QRVWLGTFNL QQDAASAYDI AARRFRGPDA LTNFINPPLQ PAESAFLESH  120
SKSEIVDMLR KHTYADEFEQ SKKRFYSVNQ NDVVAMSLNL NLKSSREILF EKTVTPSDVG  180
KLNRLVIPKQ YAEKHFPLPL TSNGVLINLE DLTGKMWRFR YSYWNSSQSY VLTKGWSRFV  240
KEKNLRAGDV VMFQRSTGLN RELFIDWKSR SDPVKVMVRL FGVDIMQNDV GVVCGGKRSR  300
DVDLFALRCS KKQAIINVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5416727111118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890683.11e-160AP2/ERF and B3 domain-containing transcription repressor TEM1
SwissprotP822801e-156RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLD7KQU41e-159D7KQU4_ARALL; Uncharacterized protein
STRINGscaffold_102941.11e-159(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-151related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]