PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA386G00001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 224aa    MW: 24949.1 Da    PI: 4.8605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA386G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-1655105155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f ta++Aa+a+  a+ +l+g
  AA386G00001  55 PVYRGVRQRN-SGKWVCELREP---NKKSRIWLGTFPTADMAARAHNVAAIALRG 105
                  68*****999.7*********8...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-1255105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3056115IPR001471AP2/ERF domain
SMARTSM003802.6E-3056119IPR001471AP2/ERF domain
PROSITE profilePS5103221.60156113IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2056115IPR016177DNA-binding domain
PRINTSPR003675.8E-95768IPR001471AP2/ERF domain
CDDcd000183.27E-3257115No hitNo description
PRINTSPR003675.8E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKKSLSVSLQ VQPCTFSGSD QDSPLSNDYD FTPTLATSCP KKPAGRKKFK ETRHPVYRGV  60
RQRNSGKWVC ELREPNKKSR IWLGTFPTAD MAARAHNVAA IALRGRSACL NFADSAWRLR  120
IPESNCPKEI QKAAAEAAVA CQNEVIDTTE DVDRTNIETA ESIETPEESN VFYCMEEGEE  180
MFGMPSLLAN MAEGMLLPPP AVPWNYNYNE VDGDADMSLW SFSI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567719.11e-102dehydration-responsive element-binding protein 1C
SwissprotQ9SYS61e-104DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLB8Y6M71e-102B8Y6M7_ARAPU; CBF2
TrEMBLB2BIW91e-102B2BIW9_ARATH; C-repeat binding factor 2
STRINGAT4G25470.11e-102(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-101C-repeat/DRE binding factor 2