PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00617
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 333aa    MW: 36716 Da    PI: 7.521
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00617genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.11.6e-3029153189
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........... 88 
                 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  ++++   e+++ ++ss+ ++sss+           
  AA32G00617  29 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLEISTTTVTAETTTLQESSKPGSSSSEanlhnqtqfet 127
                 589***********************************************************9995554433422222222221111112222223333 PP

         TCP  89 .........................k 89 
                                          +
  AA32G00617 128 tplmstffpvtsgitnsninfesynN 153
                 33555555555444444444554441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-2830175IPR005333Transcription factor, TCP
PROSITE profilePS5136932.4293290IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGLKSYNGGG DGAGVGEIVE VQGGHIIRAT GRKDRHSKVF TSKGPRDRRV RLSAHTAIQF  60
YDVQDRLGYD RPSKAVDWLI KKAKSAIDKL EISTTTVTAE TTTLQESSKP GSSSSEANLH  120
NQTQFETTPL MSTFFPVTSG ITNSNINFES YNNDLVSRTT SNLGQSQDNL GLSLHTFQGN  180
TTSSASDHHH HQATLFTTPF ETNSFGRFYN DLASSEQSRN GFLVNHQQPS MMTLLNSQQQ  240
PQQLFLGGQQ RGTLQSSFHS WDHHHNQHQH QHQHHHHNET VTDQNQASSV MFASQFGGHS  300
HGMIMQGLSF QSRIHGDGGQ ATPQPNSSSS PPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-223790154Putative transcription factor PCF6
5zkt_B3e-223790154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00617
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732230.19e-95transcription factor TCP10-like
RefseqXP_013732231.19e-95transcription factor TCP10-like
RefseqXP_022568818.19e-95transcription factor TCP10-like
SwissprotO822771e-73TCP10_ARATH; Transcription factor TCP10
TrEMBLA0A1J3IRA78e-94A0A1J3IRA7_NOCCA; Transcription factor TCP10
STRINGXP_006410230.16e-94(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.12e-63TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]