PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00599
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 201aa    MW: 22410.3 Da    PI: 6.4904
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00599genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.84.8e-3571071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C +Ck+lrrkCak+Cv+ pyf+ e+ +++fan+hk+ Gasn +kll++lp ++r  a+ +++y+A+ r+rdP+yG+v++i++lqqq+ +l+ael+ l+
  AA32G00599   7 PCGGCKFLRRKCAKGCVFTPYFCYEDaASHFANIHKVLGASNFSKLLSNLPLHDRFYAALTITYQAHSRLRDPIYGCVSHIFSLQQQVVSLQAELVFLR 105
                 7***********************9868*******************************************************************9988 PP

      DUF260  99 ee 100
                 ee
  AA32G00599 106 EE 107
                 76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.1576108IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-327105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGGLRSPCGG CKFLRRKCAK GCVFTPYFCY EDAASHFANI HKVLGASNFS KLLSNLPLHD  60
RFYAALTITY QAHSRLRDPI YGCVSHIFSL QQQVVSLQAE LVFLREEAST RFLQEDCTGP  120
NPGCDLMQQE KVLDQKVPQD SQSLFYQGCS GSDLAQISSA ADVPAVHGAA STFMAHSEPF  180
CSSNESFYYH EFMFPWSLSD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3231177116LOB family transfactor Ramosa2.1
5ly0_B1e-3231177116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00599
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879319.11e-80LOB domain-containing protein 14
SwissprotQ9SJW52e-80LBD14_ARATH; LOB domain-containing protein 14
TrEMBLD7LD163e-79D7LD16_ARALL; LOB domain protein 14
STRINGBostr.24513s0089.1.p3e-82(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.19e-83LOB domain-containing protein 14
Publications ? help Back to Top
  1. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]