PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00368
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 201aa    MW: 22320.4 Da    PI: 10.148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00368genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.8e-212877255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAaka++aa+++++g
  AA32G00368 28 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAAKAYDAAAREFRG 77
                69*******.**********8...557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.1182885IPR001471AP2/ERF domain
SMARTSM003808.4E-372891IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-232886IPR016177DNA-binding domain
PfamPF008478.5E-152877IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-332885IPR001471AP2/ERF domain
CDDcd000185.11E-192885No hitNo description
PRINTSPR003671.5E-112940IPR001471AP2/ERF domain
PRINTSPR003671.5E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAPRHENASN VGNEGGYGGG RKMKREIHYR GVRKRPWGRY AAEIRDPGKK TRVWLGTFDT  60
AEEAAKAYDA AAREFRGSKA KTNFPLPGGV IEDSGINSTL VDIPVARENT RRIEMASRFP  120
FACHRQQYIS GGFCFDPARA AALRAELARV YPVRFEPVDI ELSIGIRATA KVESSTVSSV  180
VECKRRRELN LDLNLAPPVD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-222886261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-222886564ATERF1
3gcc_A1e-222886564ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12035RKMKREIHYRGVRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865377.13e-82hypothetical protein ARALYDRAFT_494572
SwissprotQ9FE671e-83ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLD7MN184e-82D7MN18_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.8__388__AT5G44210.11e-81(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-62erf domain protein 9