PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00019
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 230aa    MW: 24694.7 Da    PI: 7.5332
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00019genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.81.7e-3322120196
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqp..kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq.leqlkaelal 96 
                 aC aCk+lrrkC+++C++apyf +eq    +fa vhk+FGasnv+kll+++p+++r da++++ +eA+ar+ dP+yG++++il l+qq + q+++e+++
  AA32G00019  22 ACGACKLLRRKCVAGCIFAPYFDSEQGgvTQFARVHKVFGASNVSKLLDHVPQHKRGDAVATISFEAQARLIDPIYGSCSHILFLHQQeVPQAETEAEA 120
                 7***********************994459*************************************************99999876526666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7521125IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-3222120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAIRPQLNST LKWKKSKSSC GACGACKLLR RKCVAGCIFA PYFDSEQGGV TQFARVHKVF  60
GASNVSKLLD HVPQHKRGDA VATISFEAQA RLIDPIYGSC SHILFLHQQE VPQAETEAEA  120
AATSGSSILD VGRIGASSVS VSVGSVYEYD QLSSIFETSS ASASWGIMEH EHQPIFGVSN  180
PNPNPNLWGS KSNNVGGDKY KSSDDDHQLQ PLPPQLSTTS TTTTSLIKPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-302312312109LOB family transfactor Ramosa2.1
5ly0_B2e-302312312109LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00019
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510942.17e-47LOB domain-containing protein 30-like
SwissprotO813234e-42LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A1S2YWA92e-45A0A1S2YWA9_CICAR; LOB domain-containing protein 30-like
STRINGXP_004510942.13e-46(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-41LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]