PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00681
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 201aa    MW: 22395.2 Da    PI: 4.5079
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00681genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260531e-16493291
      DUF260  2 CaaCkvlrrkCak.dCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
                C +C  +r++C+  +  l +yf + q+++f  v+ +FG +n  kl+++ p + r++a++ + yeA+ar++dP  G+ +++ +l++ le lk
  AA31G00681  4 CVVCSWKRQACPGlNSCLGQYFVD-QRESFHEVKAIFGITNAKKLIDKNPANLRQEAARFMKYEANARMNDPLGGSGKIVENLTEALEDLK 93
                9**********9635778899865.5699********************************************************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.8932103IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-14493IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNTCVVCSWK RQACPGLNSC LGQYFVDQRE SFHEVKAIFG ITNAKKLIDK NPANLRQEAA  60
RFMKYEANAR MNDPLGGSGK IVENLTEALE DLKIVHTAAE ILYKEAVEGN LTEALEDLNL  120
KMVHTVLFSK LACFLAEFAR LNQEIAELRE DVRSLSYRLE GDVKLEILGS ASLIQETGTS  180
SGKDSEKQDQ DETTDESEAS E
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00681
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.17e-10LBD family protein