PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 259aa    MW: 29377.2 Da    PI: 5.9313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00360genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2091140255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f++aeeAa a+++a+ kl+g
  AA30G00360  91 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDSAEEAAMAYDQAAYKLRG 140
                 59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.43E-3390148No hitNo description
SMARTSM003803.2E-3691154IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2391148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-3291149IPR001471AP2/ERF domain
PROSITE profilePS5103222.94591148IPR001471AP2/ERF domain
PRINTSPR003676.6E-1192103IPR001471AP2/ERF domain
PfamPF008472.2E-1492140IPR001471AP2/ERF domain
PRINTSPR003676.6E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAAIDMFNTE LSDPFKEELM KALKPFIKTS SSSSPSSSNT IFNFNQTTPL GLNQLTPNQI  60
NQIQNQLNRK QLQTNLSPKP IPMKTLSTQK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT  120
FDSAEEAAMA YDQAAYKLRG DFARLNFPQI KQGIDSVKPL HSSVNAKLQA IVQSLRKTED  180
CEKTEVLIKP KTEYRESEEV YEKTEYGFGR FDEGGCDSSP ESMFLDCFDS GFDEIGGLGL  240
EKCPSLEIDW DAISKLSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2190148160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411774.11e-121ethylene-responsive transcription factor ERF060
SwissprotO656651e-122ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLV4MDE31e-120V4MDE3_EUTSA; Uncharacterized protein
STRINGXP_006411774.11e-120(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-87ERF family protein