PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00265
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 250aa    MW: 27487.3 Da    PI: 8.5019
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00265genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.82.2e-302103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+
  AA30G00265   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISSVPEPNRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQAAVET 100
                 6*********************9999777889****************************************************************999 PP

      DUF260  95 all 97 
                 +l+
  AA30G00265 101 VLR 103
                 876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.3911107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPEPNR  60
PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGALRPI ISDLAIDESK  120
SLISSDESSE ICNNKQLLHH SRFSISRSKL STTKIEESQV NRKRFKSESE SDSDLDLQLN  180
HVLFSSPKSS LNTSTPPLPP SFPPSFCKAV ISDRPVSPSM ISEESVTTSY WGNGSFKKNK  240
GERKLLNLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00265
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738741e-100AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721441e-100AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229761e-100AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195470.11e-111LOB domain-containing protein 39
SwissprotQ9SZE81e-112LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A178V3Q31e-109A0A178V3Q3_ARATH; LBD39
STRINGBostr.7867s1612.1.p1e-111(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-94LOB domain-containing protein 39