PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00207
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 180aa    MW: 20406.1 Da    PI: 5.0157
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00207genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.34.9e-3351041100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaC +l++kC+++Cv+ pyfp++q++kf+ + ++FG++++l ++++lp +++++a++sl y Aear+rdP +Gavg+++++qq+ e+l + +++++e
  AA30G00207   5 SCAACEHLNQKCNDQCVFKPYFPQTQQQKFELIYQVFGTKKLLDIITNLPSSQHKNAINSLHYLAEARIRDPLEGAVGILKHYQQNNEKLLKRVHAARE 103
                 6*****************************************************************************************999999887 PP

      DUF260 100 e 100
                 +
  AA30G00207 104 K 104
                 6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.6664105IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-305101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDSLSCAACE HLNQKCNDQC VFKPYFPQTQ QQKFELIYQV FGTKKLLDII TNLPSSQHKN  60
AINSLHYLAE ARIRDPLEGA VGILKHYQQN NEKLLKRVHA AREKLAALVG IDNVPKFPDL  120
QTPMNNDFPD ISMCLPFHVD EDIDFSQTLI NQEEIVEDLE VKLTNLTVDN HDASSSSAQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-23610512111LOB family transfactor Ramosa2.1
5ly0_B4e-23610512111LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.12e-31LOB domain-containing protein 35