PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00168
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family RAV
Protein Properties Length: 312aa    MW: 36362.2 Da    PI: 9.9822
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00168genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.41.9e-094186253
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53
               +ykGV   + +g + A+I+       + +r++lg+f +a eAa a++ a  ++
  AA2G00168 41 KYKGVVKQH-NGNYGAQIYS------NhQRIWLGTFKSAIEAAIAYDSASMAY 86
               8****8777.8******999......44*******************997776 PP

2B388.84.3e-28171264183
                EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                f+k+lt sdv+k++rlv+pkk+a ++            ++ ee+++++++d++g++W+++++y+k+s+++vl+kGW +Fvk+++Lk++DfvvF+
  AA2G00168 171 FEKELTLSDVGKLNRLVIPKKYAIKYlskykneketsFSSMEEDMEIVMYDKEGKQWKFRFCYWKSSQSFVLSKGWISFVKEKNLKAKDFVVFY 264
                89**************************9977666664444499*************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-114194IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-144194IPR001471AP2/ERF domain
PROSITE profilePS5103214.6054196IPR001471AP2/ERF domain
SMARTSM003805.3E-1141102IPR001471AP2/ERF domain
CDDcd000182.57E-164194No hitNo description
Gene3DG3DSA:2.40.330.106.2E-32162265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-27168269IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-26169264No hitNo description
PfamPF023621.8E-25171265IPR003340B3 DNA binding domain
PROSITE profilePS5086313.719171291IPR003340B3 DNA binding domain
SMARTSM010199.4E-22171278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNTEQQTTIT QTSTSNDTVL PFKKRKRPND NTTTAFPNAI KYKGVVKQHN GNYGAQIYSN  60
HQRIWLGTFK SAIEAAIAYD SASMAYNSAA TAYNSEFNSH RNLPFSNITI QESNFQKHYT  120
TDVILNMIKD GSYHRKFQEF LKFQPQNIKN FTKKQETNQE LKNSSTITHL FEKELTLSDV  180
GKLNRLVIPK KYAIKYLSKY KNEKETSFSS MEEDMEIVMY DKEGKQWKFR FCYWKSSQSF  240
VLSKGWISFV KEKNLKAKDF VVFYKCDVTN TLEGQNGQKK SILMIDINRF SGVRDEEEIE  300
KKKVRLFGVD IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-241692896112B3 domain-containing transcription factor NGA1
5os9_B9e-241692896112B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175524.11e-104AP2/B3 transcription factor family protein
SwissprotQ9C6881e-105RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A178WMW51e-103A0A178WMW5_ARATH; Uncharacterized protein
STRINGAT1G51120.11e-103(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-104RAV family protein