PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA29G00257
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 303aa    MW: 32664.1 Da    PI: 5.833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA29G00257genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-1955104255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a++ l+g
  AA29G00257  55 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAALFLYG 104
                 59****999.**********954...5***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-2955112IPR001471AP2/ERF domain
PfamPF008474.8E-1355104IPR001471AP2/ERF domain
SMARTSM003807.6E-3855118IPR001471AP2/ERF domain
CDDcd000189.97E-2055110No hitNo description
PROSITE profilePS5103222.45855112IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2155112IPR016177DNA-binding domain
PRINTSPR003672.2E-105667IPR001471AP2/ERF domain
PRINTSPR003672.2E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDPFISQEQQ QHLINDPQKT LDSNNDSSTS SSSAAASAAQ RKRKGKGGPD NAKFRYRGVR  60
QRSWGKWVAE IREPRKRTRK WLGTFATAED AARAYDRAAL FLYGSRAQLN LSPSSPSSAS  120
SSSSAATAAG ATSSSPSSSS SSTQTLRPLL PRPTPSLIPP YTLPFNNNSF INGGSSYSML  180
CPSFGLFPQQ NQLVQFNQNL HCSNNGLMEG KICSDVEIPD VPTSYNSMED MNSLAGSVGS  240
SLSISTTVNP TAVIDPVCNS MGGLDPGYVM GDGSQPVWPF SGEDEYVNNW GIWDFADPFL  300
LDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1856111359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181551.16e-97ethylene-responsive transcription factor ABI4
SwissprotA0MES87e-99ABI4_ARATH; Ethylene-responsive transcription factor ABI4
TrEMBLR0HUE32e-94R0HUE3_9BRAS; Uncharacterized protein
STRINGAT2G40220.12e-96(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105522433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.14e-33ERF family protein