PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 243aa    MW: 27505.8 Da    PI: 5.251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00370genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1979128255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r ++ +g+W+AeIrdp++     r++lg+f taeeAa a++ a+k+++g
  AA26G00370  79 VYRGIRKRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAMAYDVAAKQIRG 128
                 69*******.**********954...4************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-3279136IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-2379137IPR016177DNA-binding domain
PfamPF008471.3E-1379128IPR001471AP2/ERF domain
PROSITE profilePS5103224.17179136IPR001471AP2/ERF domain
SMARTSM003801.4E-3779142IPR001471AP2/ERF domain
PRINTSPR003671.6E-118091IPR001471AP2/ERF domain
CDDcd000188.07E-3280136No hitNo description
PRINTSPR003671.6E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MCGGAIISDF APLVTKAKGR KLTAEELWSE LDASAGDDFW SFDSTSKSHF NNQVSVKEEA  60
VEKKEAVKKT ERRRTRKNVY RGIRKRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAAMAYD  120
VAAKQIRGDK AKLNFPFHQN RRPPPKPPQQ YTDQSPENKL SDFSPSEISQ LNFPVDCVGF  180
GNGNEFRTPI CVYEPDDYDL KQQISSLESF LELDGTTVEQ PSQLGESVSE VDLWMLDDVI  240
AQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-2280140667ATERF1
2gcc_A1e-2280140667ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17286RRTRKNVYRGIRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188299.11e-120ethylene-responsive transcription factor RAP2-3
SwissprotP427361e-122RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLO231431e-121O23143_ARATH; Putative Ckc2
STRINGAT3G16770.11e-120(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-103ethylene-responsive element binding protein