PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 209aa    MW: 22887.1 Da    PI: 7.5043
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00280genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.21.2e-37211211100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+C++apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+ +l++eA ar++dPvyG++g++++lq+q+++l+aela+++
  AA21G00280  21 PCGACKFLRRKCVKGCIFAPYFDAEQgTSRFAAVHKVFGASNASKMLMRLPLNKRGDAVVTLCFEALARLHDPVYGSLGHLFSLQHQVMNLQAELAHVQ 119
                 7***********************9989********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  AA21G00280 120 AR 121
                 76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.91420122IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-3721119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MMMTGNLIGD GGRNGGGGGG PCGACKFLRR KCVKGCIFAP YFDAEQGTSR FAAVHKVFGA  60
SNASKMLMRL PLNKRGDAVV TLCFEALARL HDPVYGSLGH LFSLQHQVMN LQAELAHVQA  120
RLSTIQHLPL NQTQPQTSSN LRWGSPLTDM VNNNNNNNNN SNSIELEPMS SNLDKLWEEE  180
GVVEDGELQE LAMQFVSKYL PSLKHQPCT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-35171197110LOB family transfactor Ramosa2.1
5ly0_B1e-35171197110LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11018GGRNGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506483.16e-83PREDICTED: LOB domain-containing protein 19
SwissprotO221324e-81LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A178VSY11e-78A0A178VSY1_ARATH; LBD19
STRINGXP_010506483.12e-82(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-80LOB domain-containing protein 19