PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA18G00139
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 280aa    MW: 32259.6 Da    PI: 4.8087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA18G00139genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-07156200655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  AA18G00139 156 SIAARERRRRIAEKTHELGKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 200
                 677899*****************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.525150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-9153206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-10153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-5156200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-4172203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSMGCLSYFS NWDSPIQPIQ LQDCFIPDMD MIIPETDNFF LHSQPQFHQP LFQEEAHFSN  60
HFLPPQEIFL PNPNPNPNPT EFYTETHQFD PFLPPPKRQK LSYHCNNTLL DPYDFDILPE  120
SLVFPEFKVP DFSLDFKVGR GDQDEYSRKP LLSAQSIAAR ERRRRIAEKT HELGKLIPGG  180
QKLNTAEMFQ AAAKYVKFLQ SQIGILQLVQ TTTQTPESYK VGIETQVLLS SQAIQEKLSM  240
EEVCLVPSEV VQTLTNDESI WRNPKISREI NKLLSTDLVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA18G00139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879517.11e-117transcription factor bHLH53
SwissprotQ84RD01e-116BH053_ARATH; Transcription factor bHLH53
TrEMBLD7LH481e-116D7LH48_ARALL; Predicted protein
STRINGAl_scaffold_0004_19651e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-113bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]