PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA17G00077
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CPP
Protein Properties Length: 658aa    MW: 71949.9 Da    PI: 6.8787
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA17G00077genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.12.6e-16442480139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  AA17G00077 442 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 480
                 589***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163425.365356482IPR005172CRC domain
SMARTSM011143.7E-17442483IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-11444480IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MDKPPKPPAQ IDTPLSKSKS KFEDSPVFNY INNLSPIEPV KSIPTGQTFN SLSFASPPPV  60
FASPHVTSHR ESRFFKSHNS SDLSKTMESL EGASSKGEGA AAAEDLNKDE ASIEMSCDNS  120
VMEMPQILNS DCQTPNRDTG DVTEEMLAPS ASQGENCFSE DVRMGLQKML NAPEENETPD  180
CGRLISDATE LLVFRSPNDS EAFGCLVKKI SSSEKRFCAG VLALKQPDTS YVTKDIPANG  240
SSSESEPPLP LLPNESGSNL HRGMRRRCLH FEVAGKRKKE IADDQQTMSN NKPAGESSSR  300
CVVPGIGLHL NAIAMSSSEN KTISIHDYSI TGEIQKTLSD STTPIHSQDN AREALNQTGI  360
EPVEGVCLNK LEKVTHVSDV TAKKPCSCVD CFNKPIHEET VLATRKQIES RNPLAFAPKV  420
IRRADSVMET GDDASKTPAS ARHKRGCNCK KSNCLKKYCE CYQGGVGCSI NCRCEGCKNA  480
FGRKDGSLFV SMDSKQEDHE THDKRIPNIQ QNSEMSKEIE QNPSSDLPST PLPPYRHLVI  540
QQPFLSKNRL PPTQFSLGIG SSSGLENCRS FRKPNSDLTE SRIEKPLETI TEDRAETMPE  600
ILVNSPITTI KAISPNGKRV SPPHLNSSES GSILGRRSTG RKLILRSIPA FPSLNQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1139747949120Protein lin-54 homolog
5fd3_B8e-1139747949120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264278RRRCLHFEVAGKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00370DAPTransfer from AT3G22780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA17G00077
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297098.10.0CRC domain-containing protein TSO1
SwissprotQ9LUI30.0TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLD7L2F30.0D7L2F3_ARALL; Uncharacterized protein
STRINGBostr.19424s0382.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14672891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  2. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  3. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]