PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA16G00088
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 400aa    MW: 43805.6 Da    PI: 6.7898
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA16G00088genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17162211155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  AA16G00088 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 211
                 78*******************......55*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-10162211IPR001471AP2/ERF domain
CDDcd000183.56E-25162221No hitNo description
SuperFamilySSF541713.2E-16162220IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-18163219IPR001471AP2/ERF domain
PROSITE profilePS5103217.794163219IPR001471AP2/ERF domain
SMARTSM003801.5E-33163225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MLDLNLEVES DSTQDGLDSA VVKGDSGGIL NQMVESVTSN SSVVNADASS CIDGEEESCS  60
TRAVMFHFEI LKGVGGEGKR EEEKDVAMAS ELFAVTEGDG NGRNYLKPGA HSSRSSIDIS  120
FQGWKQGGEF HGGASSDRAE RLVQPPSQPV KKSRRGPRSK SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHSAAR AYDRAAIKFR GPDADINFTI SDYEEDIKQL ANLTKEEVVQ  240
VLRRQSNGFS RGNSRYQGVA LQNFGGWGAK MDLFLGKKAC DKASIKWNGR EATSKSDSHV  300
SHVILEAADE NLDLNLGISL RAGDGPKQKD RCLQLHHAPN DVVFRNNSMM DSHPAGASCG  360
PPFNFLKRGS DHPTNGNGPP LTFFSPKDDH KQLMSYFQCL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA16G00088
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400879.11e-170AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG21e-162TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLE4MWP91e-168E4MWP9_EUTHA; mRNA, clone: RTFL01-19-B14
TrEMBLV4LIS41e-168V4LIS4_EUTSA; Uncharacterized protein
STRINGXP_006400879.11e-169(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.11e-140target of early activation tagged (EAT) 2