PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA15G00099
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 447aa    MW: 48627.6 Da    PI: 6.9535
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA15G00099genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.99e-35501662123
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssgka 90 
                 +gkkd+hsk++T++g RdRRvRlsa++a+ f+d+qd+LGfd++sk+++WL+++ak ai++l+++                     +  +++s     ++
  AA15G00099  50 TGKKDKHSKVCTAKGARDRRVRLSALTAIHFYDVQDRLGFDRPSKALDWLINKAKSAIDDLAQLppwnptdslrH----------AAANAKS-----RK 133
                 79**************************************************************44333332221..........2222222.....12 PP

         TCP  91 aksaakskksqksaasalnlakesrakararar 123
                  k+  +s+++++ +     +   + +k r++++
  AA15G00099 134 PKTLVSSSPPENVKIRSPPVISGTEHKHRQQQK 166
                 222222222222222222223333333333322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3150166IPR005333Transcription factor, TCP
PROSITE profilePS5136931.05952110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MANEESNHHH YIISPSPPFS MRNQTAAAAE ESGGYGEIVE VHGGHIMRST GKKDKHSKVC  60
TAKGARDRRV RLSALTAIHF YDVQDRLGFD RPSKALDWLI NKAKSAIDDL AQLPPWNPTD  120
SLRHAAANAK SRKPKTLVSS SPPENVKIRS PPVISGTEHK HRQQQKRRQI GEIPMNSNEL  180
SFLPPSLDSD SIADTIKSFF PVGGGCSSSE SPPEIIQNYN QPSDLISRHQ NLQLSLQSFQ  240
NNPPSLLLHH NHRGGAEPVL FSGENNPLEL DTSATEWEQS HHNHHQSQEF ERIQRFIAWN  300
SGGAAETGGG TAEIGGEAAE TGGGTAEIGG EAAETGGGSG GGGFVFASPP ILNYQSQVFS  360
QRGSLQSINT PLIRAWFDPY HPIIAGDLHN HNHHSYHIPP AIHHSATPGI AFGSSEFSGF  420
RIPARFQEEQ NDGITNKPSF ASSNSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1857110154Putative transcription factor PCF6
5zkt_B2e-1857110154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA15G00099
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392814.11e-147transcription factor TCP3
RefseqXP_006392815.11e-147transcription factor TCP3
SwissprotQ9MAH81e-124TCP3_ARATH; Transcription factor TCP3
TrEMBLV4JXC21e-146V4JXC2_EUTSA; Uncharacterized protein
STRINGXP_006392814.11e-147(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-91TCP family protein
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]