PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA15G00095
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 92aa    MW: 10416.8 Da    PI: 11.1378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA15G00095genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.3e-212070256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+ta+eAa+a++aa+++++g+
  AA15G00095 20 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAQEAARAYDAAAREFRGA 70
                59*******.**********8...557*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.1E-332077IPR001471AP2/ERF domain
PfamPF008477.2E-152069IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-232078IPR016177DNA-binding domain
PROSITE profilePS5103224.1572077IPR001471AP2/ERF domain
CDDcd000181.40E-212077No hitNo description
SMARTSM003808.8E-362083IPR001471AP2/ERF domain
PRINTSPR003678.0E-122132IPR001471AP2/ERF domain
PRINTSPR003678.0E-124359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MALKSNSISP NPSRNFNEIR YRGVRKRPWG RYAAEIRDPG KKTRVWLGTF DTAQEAARAY  60
DAAAREFRGA KAKTNFPTFL EINEKTLTPA IG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-212183667ATERF1
3gcc_A6e-212183667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407000.11e-43hypothetical protein EUTSA_v10021456mg
SwissprotO803402e-42ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLV4M7V91e-43V4M7V9_EUTSA; Uncharacterized protein
STRINGBra027270.1-P2e-41(Brassica rapa)
STRINGscaffold_301765.14e-41(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.16e-35ethylene responsive element binding factor 4