PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA13G00092
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 236aa    MW: 26187.9 Da    PI: 8.5567
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA13G00092genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.74.2e-292101195
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p +     p++q  ++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Ga+g+++++++ ++q+++++
  AA13G00092   2 SCNGCRVLRKGCSENCILRPSIqwiqtPEAQGYATVFVAKFFGRAGLMSFISDVPESQAPALFQSLLYEACGRTINPVNGAIGLLWTGNWSICQAAVQT 100
                 6*************************99******************************************************************99886 PP

      DUF260  95 a 95 
                  
  AA13G00092 101 I 101
                 5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.071107IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PSIQWIQTPE AQGYATVFVA KFFGRAGLMS FISDVPESQA  60
PALFQSLLYE ACGRTINPVN GAIGLLWTGN WSICQAAVQT ILRGGSLKPI PEIGGFAGFP  120
SILRGGSSEI CNEMLYLRRN DSDDRKIYHH CRFSNSRSRS RSSPPKRKRL AEQQHLSELN  180
LSQIPNFRIK TMSLDKDTCR PETPSIYSDE SVTVSPVKIS GDCYDGEDAK LLNLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA13G00092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291765.11e-116LOB domain-containing protein 38 isoform X1
RefseqXP_023638239.11e-116LOB domain-containing protein 38 isoform X2
SwissprotQ9SN231e-108LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1J3EEH71e-116A0A1J3EEH7_NOCCA; LOB domain-containing protein 38
STRINGCagra.4491s0014.1.p1e-115(Capsella grandiflora)
STRINGXP_006291765.11e-115(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-104LOB domain-containing protein 38