PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA130G00005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 235aa    MW: 26947.3 Da    PI: 4.4046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA130G00005genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-173685255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a ++++g
  AA130G00005 36 KYIGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRASRSIRG 85
                 799******.**********965...5*********************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-293699IPR001471AP2/ERF domain
PfamPF008471.9E-123685IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-273693IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-213694IPR016177DNA-binding domain
CDDcd000181.91E-303692No hitNo description
PROSITE profilePS5103220.7713693IPR001471AP2/ERF domain
PRINTSPR003676.0E-93748IPR001471AP2/ERF domain
PRINTSPR003676.0E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEFKGNSNTG SSSSSSRSKK SQKQTQKQQQ VDEEIKYIGV RRRPWGRYAA EIRNPTTKER  60
YWLGTFDTAE EAALAYDRAS RSIRGLTART NFVYSDMPRG ISVTPFVSPD ESQRFISELF  120
DPPRQLNTQN NNNNIDNQNI DFIESSYNND SFGAIMPQEI LESRSGYGDY CNHELPPLPP  180
STCFGAELRI PDSDNYNWNS FDVESNEFEG FLDQNSVGEM ETNVFDYSNT TMFYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1833921171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA130G00005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597428.11e-94PREDICTED: ethylene-responsive transcription factor ERF087-like
SwissprotQ9FZ902e-92ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A0D3D6B63e-93A0A0D3D6B6_BRAOL; Uncharacterized protein
STRINGBo7g048420.15e-94(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.13e-86ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]