PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00109
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CPP
Protein Properties Length: 542aa    MW: 61630.9 Da    PI: 8.9688
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00109genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR22.91.8e-071441681641
         TCR  16 kYCeCfaagkkCseeCkCedCkNkee 41 
                 +YCeCfa g++C+  C+C +C+N+ e
  AA12G00109 144 RYCECFATGTYCNG-CNCLNCQNNLE 168
                 6*************.********976 PP

2TCR50.34.8e-16205244140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeC++a+  Cs++CkC+dCkN e
  AA12G00109 205 KHNKGCHCKKSGCLKKYCECYQANILCSDNCKCQDCKNFE 244
                 589***********************************65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163429.173132245IPR005172CRC domain
SMARTSM011140.0018137169IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.6E-5144166IPR005172CRC domain
SMARTSM011142.2E-19205246IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-12208243IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MEKFDRDLRS KRNLARQLDF SPQSETGTKM DSNLKRRKQS HSVLDSQSSL EEQRREDSVS  60
TNLTPLGAEE ELRLGLKSPK PPFSVVKSTP TAVNTHELQR QDVTPPQKPP LHRFSHQVQN  120
HSSEKSRVRF KQARTLYPTR ADGRYCECFA TGTYCNGCNC LNCQNNLENE STRQDTIMMI  180
LERNRDAFKP KIKNLQDDAR QKLGKHNKGC HCKKSGCLKK YCECYQANIL CSDNCKCQDC  240
KNFEGSEERH ALLHGPQIPE TYIQHTTNAA VHRAVNISGF QNSFESRNRK NTEASRVIAA  300
RGSPVVSQFP QYQPGNHVAR NGTTSLFSVP NNGEASRPTT SNYRSSLSNT IQPHHVREIC  360
SVLVSKSVDV AKKLSGTKCV TDKRTKHDTE PSPGPTQRDA KGITVSPDTV LKVHPFENQT  420
ATRIDAAVPD RHDTGEIDRP ISPATRALMC DEEHVIIPEK ETLAQTTTNQ EKEEDTEKTS  480
HEFSEIYREQ ERQILSHFRD CLIQLATRTS RNGTKMKATK NLRRMETEED EVQRRRRDLR  540
FG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2414525425132Protein lin-54 homolog
5fd3_B1e-2414525425132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00109
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728833e-35AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBankAC1893213e-35AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006995.10.0protein tesmin/TSO1-like CXC 7
SwissprotF4JY841e-142TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLV4KXJ10.0V4KXJ1_EUTSA; Uncharacterized protein
STRINGXP_006394827.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-130Tesmin/TSO1-like CXC domain-containing protein