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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA123G00069 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 300aa MW: 34878.1 Da PI: 9.7617 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.5 | 4.4e-17 | 18 | 110 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk+l +sd +++++ lp +f++ +k s +++l+ ++g+sWe+k+ ++s+ y+ + W +F ++n L + +f++F+++g+++f v++ AA123G00069 18 FFKILHSSDLSSENMRALPQDFVRLVPEKDLLSLKMVLRLQWGKSWEIKI--LRNSRFyYMEKHSWDKFISENSLGQHEFLTFTYHGQMCF--GVHI 110 99*********************9998888999*****************..888888466669**********************99999..4444 PP | |||||||
2 | B3 | 33.2 | 8.9e-11 | 218 | 289 | 15 | 90 |
-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 l +pkkf+ ++ +ees++ + +++g + Wev++ + r ++++GW+ ++ L + D+++Fkl++r+e AA123G00069 218 FLGIPKKFV-RYL--PEESTMFLIHHPNGkKLWEVTY--LVSETRGTFSGGWSYLARTYPLAVYDVCTFKLIKRNEI 289 578******.563..45676777778999678*****..666666669***********************987554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-18 | 11 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-19 | 12 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.09E-15 | 16 | 111 | No hit | No description |
SMART | SM01019 | 3.7E-20 | 18 | 114 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.38 | 18 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-15 | 18 | 110 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.24E-15 | 202 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-12 | 203 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.587 | 204 | 297 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.72E-10 | 205 | 287 | No hit | No description |
SMART | SM01019 | 3.2E-13 | 207 | 297 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-8 | 218 | 289 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MKNTDFALSM EEREVPSFFK ILHSSDLSSE NMRALPQDFV RLVPEKDLLS LKMVLRLQWG 60 KSWEIKILRN SRFYYMEKHS WDKFISENSL GQHEFLTFTY HGQMCFGVHI YGKDGKELLR 120 PRNSPSGGFK TEQEKKKKMK QEVKEEVKEE PESSSEVSYL GKRGAESIVT KQEQRTVEST 180 IAKKQKHKEK IDSVPRDFVA RDSVPEFSIT IQKSYLIFLG IPKKFVRYLP EESTMFLIHH 240 PNGKKLWEVT YLVSETRGTF SGGWSYLART YPLAVYDVCT FKLIKRNEIL LTVSSSASSS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00517 | DAP | Transfer from AT5G18090 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9FK61 | 4e-85 | Y5809_ARATH; B3 domain-containing protein At5g18090 | ||||
STRING | AT5G18090.1 | 1e-82 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18090.1 | 1e-75 | B3 family protein |