PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA123G00069

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Protein Properties

Length: 300aa MW: 34878.1 Da PI: 9.7617

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA123G00069	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.5	4.4e-17	18	110	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk+l +sd +++++ lp +f++ +k s +++l+ ++g+sWe+k+ ++s+ y+ + W +F ++n L + +f++F+++g+++f v++ AA123G00069 18 FFKILHSSDLSSENMRALPQDFVRLVPEKDLLSLKMVLRLQWGKSWEIKI--LRNSRFyYMEKHSWDKFISENSLGQHEFLTFTYHGQMCF--GVHI 110 99*******************9998888999*************..888888466669********************99999..4444 PP
2	B3	33.2	8.9e-11	218	289	15	90
-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 l +pkkf+ ++ +ees++ + +++g + Wev++ + r ++++GW+ ++ L + D+++Fkl++r+e AA123G00069 218 FLGIPKKFV-RYL--PEESTMFLIHHPNGkKLWEVTY--LVSETRGTFSGGWSYLARTYPLAVYDVCTFKLIKRNEI 289 578****.563..45676777778999678*..666666669*********************987554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.6E-18	11	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-19	12	114	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.09E-15	16	111	No hit	No description
SMART	SM01019	3.7E-20	18	114	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.38	18	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.7E-15	18	110	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.24E-15	202	293	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.3E-12	203	293	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.587	204	297	IPR003340	B3 DNA binding domain
CDD	cd10017	3.72E-10	205	287	No hit	No description
SMART	SM01019	3.2E-13	207	297	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-8	218	289	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MKNTDFALSM EEREVPSFFK ILHSSDLSSE NMRALPQDFV RLVPEKDLLS LKMVLRLQWG 60 KSWEIKILRN SRFYYMEKHS WDKFISENSL GQHEFLTFTY HGQMCFGVHI YGKDGKELLR 120 PRNSPSGGFK TEQEKKKKMK QEVKEEVKEE PESSSEVSYL GKRGAESIVT KQEQRTVEST 180 IAKKQKHKEK IDSVPRDFVA RDSVPEFSIT IQKSYLIFLG IPKKFVRYLP EESTMFLIHH 240 PNGKKLWEVT YLVSETRGTF SGGWSYLART YPLAVYDVCT FKLIKRNEIL LTVSSSASSS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00517	DAP	Transfer from AT5G18090	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9FK61	4e-85	Y5809_ARATH; B3 domain-containing protein At5g18090
STRING	AT5G18090.1	1e-82	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	1e-75	B3 family protein