PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00357
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 266aa    MW: 28729.6 Da    PI: 8.5778
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00357genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.41e-2841081100
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg++++++++l+q+++e+
  AA10G00357   4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDNLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWHLCQSAVEA 102
                 6*************************************************************************************************9 PP

      DUF260  95 allkee 100
                 +l +e+
  AA10G00357 103 VLKGEP 108
                 988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381558.2E-991266IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.1053109IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-234103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDN  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWHLCQSAV EAVLKGEPIA AIASDAAANG  120
QGPPLKSYDI RHNSKDENSA AAVTGSTDRK RGRTRRTKKA SVVGNPSESQ GKSGGEVSHE  180
SSLSHQSGVV AVHEEESKES ESNFSEVLTF SPPAPAMQEP GEIKLDLTLR LEPVSRAYHV  240
VPVKKRKIGV FGSCEEERTF KTELVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408407.11e-156LOB domain-containing protein 41
SwissprotQ9M8861e-156LBD41_ARATH; LOB domain-containing protein 41
TrEMBLV4LH471e-155V4LH47_EUTSA; Uncharacterized protein
STRINGXP_006408407.11e-155(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-133LOB domain-containing protein 41