PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020422
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TCP
Protein Properties Length: 390aa    MW: 43802.6 Da    PI: 5.9858
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-754160997PU_refplantGDBView CDS
gnl|UG|Aan#S55021749PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.41.5e-39116215289
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssg....... 88 
                agkkdrhskihT++g+RdRR+Rls+++a++fFdL d+LGfdk+sktieWL++++k+ai+e t+t      +       +  s+ +++     +       
  Aan020422 116 AGKKDRHSKIHTAQGLRDRRMRLSVHTARKFFDLNDMLGFDKASKTIEWLFNKSKKAIDEVTETiqsddaT-------QRTSNDNNDI----Esslspce 204
                89**************************************************************4322221.......2222222222....22223443 PP

        TCP  89 ..........k 89 
                           
  Aan020422 205 tesmieiitaG 215
                33333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-38117241IPR005333Transcription factor, TCP
PROSITE profilePS5136935.588118176IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDYMFPSRNN ENLLLNSNKL TNHGDIGLGQ ENVSASSLLL DCLIKSSAVH KNSQEGEPPL  60
SMHVPSPFFN EMNNEGHVTA TTTTTIGSQN NPLKLCNTTK EPLASKLKGV RKKRSAGKKD  120
RHSKIHTAQG LRDRRMRLSV HTARKFFDLN DMLGFDKASK TIEWLFNKSK KAIDEVTETI  180
QSDDATQRTS NDNNDIESSL SPCETESMIE IITAGTDKDD NLEVQGDHDI NQIEDESSLG  240
RTRGRMMFHT VNKPKQMFQA DSNVDFHQSQ LEFSQNLDNQ NMEESSCYPL EFSNTYHCLK  300
HLHLDNTVRN TDTYFNYNKT VAEPPAGWLN SRNTFLGFLG GWDSDLPRIE SNNGIMPNIA  360
PLTGSMNEEN PSSGLNCSSF VNFHLQNHGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-14123176154Putative transcription factor PCF6
5zkt_B1e-14123176154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.1270.0leaf| trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024992301.11e-142transcription factor TCP12-like
TrEMBLA0A2U1NGW50.0A0A2U1NGW5_ARTAN; Transcription factor, TCP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-27TCP domain protein 12