PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan018336
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TCP
Protein Properties Length: 195aa    MW: 20669.6 Da    PI: 6.2904
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-632160996PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP69.79.3e-222572981
        TCP 29 aarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssss 81
               aar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+     a+s+  s
  Aan018336  2 AARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaaaGAVSHGLS 57
               89***********************************9999966633222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136918.616135IPR017887Transcription factor TCP subgroup
PfamPF036343.7E-15277IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
XAARIFQLTR ELGHKSDGET IQWLLQQAEP SIIAATGTGT IPASALAAAG AVSHGLSISA  60
GLQHKLDELG SSNNNSNISG ACRTTWPMMT RPISHMANPM WSPTATPVSG FGYQSPSSSS  120
VSNLEIDGSN YLQKIAFSGY DLPGSNMGQM SFSSILGNHD HSQQQQQQQQ QHPGLELGLS  180
QDAHIGVLNQ QALNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021982451.14e-81transcription factor TCP20-like
SwissprotQ9LSD53e-37TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A2U1MHB81e-106A0A2U1MHB8_ARTAN; TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20
STRINGXP_007161676.12e-65(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.18e-33TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]