PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan016124
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB_related
Protein Properties Length: 300aa    MW: 32607.5 Da    PI: 8.2292
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-31034PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-174589147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r+++T eE+ +++ a++ +G++ W++Iar ++ gRt++ +k++w++ 
        Aan016124 45 RKPFTHEEERIILSAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 89
                     789*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.461139IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-112052IPR009057Homeodomain-like
SuperFamilySSF466891.76E-242392IPR009057Homeodomain-like
PROSITE profilePS5129425.1534094IPR017930Myb domain
SMARTSM007171.8E-164492IPR001005SANT/Myb domain
PfamPF002491.9E-154589IPR001005SANT/Myb domain
CDDcd001678.34E-134790No hitNo description
Gene3DG3DSA:1.10.10.603.0E-205391IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
XFVIQIGLHF RPHGIGLSLP KASPGRSGKS CRLRWCNQLD PALKRKPFTH EEERIILSAH  60
AIHGNKWAAI ARLLPGRTDN AIKNHWNSTL RRRGVGFGRF NIGSGNTMDE AATASIDRSK  120
ASSEETLSCG DVNSFKCVDG VDVTSDHYVE NSQLNSDPPT LFRPKPRVSA FNVYNSDDSS  180
ETQGILIQSS KADIGIGKLL EGERLVPHQC GYGCCGMSTL ANSKKSLLGP EFVDYAEQPC  240
FPSHELAALA TDISNIAWLR SGLENNSVKP TDNVIPKNVH SMPVSWQPST AQPANVGSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26199333107B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024981890.11e-146transcription factor MYB1-like
SwissprotQ425752e-79MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2U1PT200.0A0A2U1PT20_ARTAN; Homeodomain-like protein
STRINGXP_006429252.11e-106(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-81myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]