PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan006209
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 302aa    MW: 32986.5 Da    PI: 8.4415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-63772PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-066385123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Aan006209 63 FVCEICNKGFQRDQNLQLHRRGH 85
               89*******************88 PP

2zf-C2H213.70.00018139161123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC  C+k +  +s+ k H++ +
  Aan006209 139 WKCDQCSKKYAVQSDWKAHLKIC 161
                58******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.8E-66285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.26E-86285No hitNo description
PfamPF121714.3E-56385IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496385IPR007087Zinc finger, C2H2
SMARTSM003550.0176385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355210104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-5127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.26E-8134159No hitNo description
SMARTSM0035580139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTAEVDNSLA LVESAVSGEG SGASPAANVE KPVKRKRNLA GMPDPDAEVI ALSPKTLMAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEIR KRVYVCPEPS CVHHDPSRAL  120
GDLTGIKKHF CRKHGEKKWK CDQCSKKYAV QSDWKAHLKI CGTREYKCDC GTLFSRRDSF  180
ITHRAFCDAL AVESAKGQPE DEHPQKKDEE PKPQSVEPTP QSTSTASPPP PPVPLAPTPL  240
TVVAPVTPVA SSVLCIKNTP ELPEVSELNN DPRPVLDNQP QLVGGLTVSC SGSCSSTHTG  300
ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34135196364Zinc finger protein JACKDAW
5b3h_F4e-34135196364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024968343.11e-157protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-119IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2U1QCS60.0A0A2U1QCS6_ARTAN; Uncharacterized protein
STRINGGorai.009G203800.11e-123(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-113indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]