PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan004122
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 205aa    MW: 23208.3 Da    PI: 9.7732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41932442PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-065779123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Aan004122 57 FVCEICNKGFQRDQNLQLHRRGH 79
               89*******************88 PP

2zf-C2H217.31.3e-05133155123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC+ C+k +  +s+ k H++t+
  Aan004122 133 WKCERCSKKYAVQSDWKAHMKTC 155
                58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-65679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-85679No hitNo description
PROSITE profilePS5015710.9495779IPR007087Zinc finger, C2H2
PfamPF121712.5E-55779IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035512098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-6121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-8128154No hitNo description
SMARTSM0035577133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAVSVSTTEC SSVGGNPTPP NPDTQPVKKK RNLPGMPDPE AEVIALSPTT LVATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLKQRDG KEIRKRVYVC PEVSCIHHDP SRALGDLTGI  120
KKHFSRKHGE KKWKCERCSK KYAVQSDWKA HMKTCGTKEY RCDCGTLFSR RDSFITHRAF  180
CDALAQESVR SQPQVETSVV PLTNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35129190364Zinc finger protein JACKDAW
5b3h_F3e-35129190364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765277.11e-132protein indeterminate-domain 2-like isoform X1
RefseqXP_023765278.11e-132protein indeterminate-domain 2-like isoform X2
SwissprotQ9SCQ61e-112IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2U1Q4081e-152A0A2U1Q408_ARTAN; Zinc finger, C2H2-like, Zinc finger, double-stranded RNA binding protein
STRINGVIT_18s0001g12220.t011e-116(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-114indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]