PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan003652
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB_related
Protein Properties Length: 247aa    MW: 28017.6 Da    PI: 10.7413
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-150063PU_refplantGDBView CDS
gnl|UG|Aan#S41922411PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.9e-114781339
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                     +WT eE +++++a +++G++ Wk++a+++  +R  ++
        Aan003652 47 PWTDEEVDRFYKAYRKYGKE-WKKVAAMVR-TRNSEM 81
                     8*******************.********9.998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.46E-114391IPR009057Homeodomain-like
SMARTSM007173.8E-54492IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-74682IPR009057Homeodomain-like
CDDcd001673.21E-74782No hitNo description
PfamPF002494.1E-94782IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAPTRKSRSV NKRYSDYIDV SPSKFLPPTN KSTGRQKRKL SDMLGSPWTD EEVDRFYKAY  60
RKYGKEWKKV AAMVRTRNSE MVEALYTMNR AYLSLPEGTA SVVGFIAMVS DHYNALEGSD  120
NDQETKELPK TIHKAKKRSQ GLLQKNGGED HLQSRPVRSS DRRLPQLKIR ESDGCTVRKR  180
TPRFPINHSS RRDNGGSYVS PSKTNQKREV DDVAHGAAMA LTEALQRGGS PQVFQSPHRM  240
KTTPSRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.200560.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021993773.11e-133protein ALWAYS EARLY 2-like
SwissprotQ6A3323e-54ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A2U1MH481e-171A0A2U1MH48_ARTAN; Uncharacterized protein
STRINGGorai.005G058900.12e-71(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-56DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]