PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan002900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB_related
Protein Properties Length: 302aa    MW: 33037.6 Da    PI: 10.2661
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-106806PU_refplantGDBView CDS
gnl|UG|Aan#S41967331PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v ++G+g W+tI +          R+  ++k++w++
        Aan002900  5 KQKWTNEEESALKAGVVKHGSGKWRTILKDPEfshilYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.958158IPR017930Myb domain
SuperFamilySSF466897.1E-15271IPR009057Homeodomain-like
SMARTSM007175.0E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-13556IPR009057Homeodomain-like
PfamPF002494.8E-8555IPR001005SANT/Myb domain
CDDcd116609.09E-18656No hitNo description
PROSITE profilePS5150423.335113187IPR005818Linker histone H1/H5, domain H15
SMARTSM005267.4E-12117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-17117192IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-15118188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.9E-9124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGAPKQKWTN EEESALKAGV VKHGSGKWRT ILKDPEFSHI LYLRSNVDLK DKWRNMSVMA  60
NGWGSREKAR IALKRIHSGS KDDNPLALAN VDDTDDDSGD GRPLPSSSGS PQTGGSKRSM  120
IRLDNLIMEA ISNLKEPGGS NKTTIGSYIE EQYWAPPNFK RLLSMKLKFL TQTGKLVKTK  180
RRFRIASANV MVSDKKKIPS MLRLEGGRPS GSSPRFDKDD INVPTRGQID LELQKMRSMT  240
PQEAAAAAAQ AVAEAEAAIA EAEEAAREAE AAEADAEAAQ AFAEAAMKTL KGRTAQRLMI  300
RA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024979249.11e-153telomere repeat-binding factor 1
SwissprotQ8VWK47e-98TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2U1NMX30.0A0A2U1NMX3_ARTAN; Uncharacterized protein
STRINGXP_009606142.11e-113(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.39e-92telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]