PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43935.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 294aa    MW: 32769.2 Da    PI: 8.6585
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43935.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.3e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I r        ++R+  ++k++w+++
       KFK43935.1  5 KLKWTAEEEETLLAGVEKHGPGKWKNILRDPEfadklTNRSNIDLKDKWRNL 56
                     689***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.354162IPR017930Myb domain
SuperFamilySSF466894.67E-16359IPR009057Homeodomain-like
SMARTSM007172.8E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-14556IPR009057Homeodomain-like
PfamPF002491.0E-9556IPR001005SANT/Myb domain
CDDcd116607.81E-21756No hitNo description
SMARTSM005269.5E-16124190IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.0E-9124195IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-13125201IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.593126195IPR005818Linker histone H1/H5, domain H15
PfamPF005388.5E-7128188IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGNQKLKWTA EEEETLLAGV EKHGPGKWKN ILRDPEFADK LTNRSNIDLK DKWRNLSVAP  60
GIQGSKDKVR TPKIKAAAFQ LAANAALAIN PPPHTGDISP VAPLSRSGSF DLGTEESFNF  120
GADAKNAPRY DGMIFEALSG LADENGSDVG AIYNFIEQQR HEVPPNFRRI LSSRLRRLAA  180
QCKLVKTQNF YKMNDNSLGT RTPLAARPKE IKREPHHRQV NNNPGILVSQ ERVSEASVTA  240
AYKLVEVENK LDVVKGAVDE IDRMTRLQDQ ADVILMLARE MHEQCSQGMI VELY
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43935.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416694.11e-136telomere repeat-binding factor 4 isoform X3
SwissprotF4I7L11e-130TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A087HP830.0A0A087HP83_ARAAL; Uncharacterized protein
STRINGA0A087HP830.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-126MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. KotliƄski M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]