PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 442aa    MW: 47476.9 Da    PI: 9.7295
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43270.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07199243144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r+ W+ +Ed+ l+ av++ G g+W+ I +    g  Rt  q+  rw
       KFK43270.1 199 RKIWSSDEDKVLIAAVRRCGEGNWAQIVNgdFKG-ERTNSQLAQRW 243
                      566**********************995411344.77777777777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.284194251IPR017930Myb domain
SuperFamilySSF466892.37E-11196249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-11196246IPR009057Homeodomain-like
SMARTSM007178.0E-6198249IPR001005SANT/Myb domain
CDDcd116603.24E-11202248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVGSSRSNDQ RKRKISEGDI ATLLQRYDVK TILRLLQEMS YYSEVKMDWN ELVKKTTTGI  60
TNAREYQLLW RHLSYRYPLL PVDEDAQPLD DDSDMECELE VSPAVSSEAT MEAIAYVKVM  120
AAAYVPNESD ILDDSTVEAP MTINIPYSLP EGTKEPSESP WSSRGMNITF PVCLQKASST  180
EGMNGNGSAC SSMAVRKKRK IWSSDEDKVL IAAVRRCGEG NWAQIVNGDF KGERTNSQLA  240
QRWALIRRRR CDIPTPRSLS SLQQTEAHKA VNNALSVALG KPPPSKKLAV GTSPKILSFG  300
ITKTQANGGS SSQGQQQSKP VVQALPQTAT SVSASKSRVA VRKTTPTSTT RSDLMVKANS  360
VAAAACMGGV GISTAALVPK AEPGKTDAPL VPKTEPAKNA STACMSRPSG GSFSLPKVEP  420
GKSVTAYSIA KAVGPANTRA SS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868169.10.0uncharacterized protein LOC9328581 isoform X1
TrEMBLA0A087HMB80.0A0A087HMB8_ARAAL; Uncharacterized protein
STRINGA0A087HMB80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein