PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42526.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 364aa    MW: 41830.8 Da    PI: 6.8549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42526.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.96.9e-3961313128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 +GfrF+Ptdee++++yL++k  +++ +++++v+++++i +++Pw+L+ +  +k+e++ w fF ++++ky++g+r+ r+tksgyWk+tgk +e+++k+ge
  KFK42526.1   6 VGFRFRPTDEEILKDYLRPKNLDNNtNHVDRVFNTINISSFDPWELRdQsIMKSEDQVWCFFGRKENKYNRGDRQIRKTKSGYWKKTGKPTEIKRKNGE 104
                 7******************9776663777778**************85347788999****************************************** PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 ++g k +Lvf+    ++ +kt+Wvmhey+l
  KFK42526.1 105 KIGEKWVLVFHM---SNKKKTKWVMHEYHL 131
                 ***********4...33458********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.594149IPR003441NAC domain
SuperFamilySSF1019411.23E-434149IPR003441NAC domain
PfamPF023655.1E-226131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVNPVVGFRF RPTDEEILKD YLRPKNLDNN TNHVDRVFNT INISSFDPWE LRDQSIMKSE  60
DQVWCFFGRK ENKYNRGDRQ IRKTKSGYWK KTGKPTEIKR KNGEKIGEKW VLVFHMSNKK  120
KTKWVMHEYH LFSPDQVMMT YTVCKVKFKG EASEISSPPT GEIEHNHSDI TQMNSSRGLS  180
TGSEVGTAFE CLQSQEIEIP PQFSGLPDVF EETQLTYDAM HKDISNMSTD GFNNLLNDDA  240
YEQRKVMFMQ ENRSNHGPKK PITGVFIGYS SDDDDDDDIS ATTGSIQTST TCDDSFGSSN  300
HRVDQLTDLQ ESPNSTIKSS QNVDHTPSQE TKILGQEKTK NKRAGFFYRI IQRLIKKIQL  360
CTSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-19713620147NO APICAL MERISTEM PROTEIN
1ut4_B2e-19713620147NO APICAL MERISTEM PROTEIN
1ut7_A2e-19713620147NO APICAL MERISTEM PROTEIN
1ut7_B2e-19713620147NO APICAL MERISTEM PROTEIN
3swm_A2e-19713623150NAC domain-containing protein 19
3swm_B2e-19713623150NAC domain-containing protein 19
3swm_C2e-19713623150NAC domain-containing protein 19
3swm_D2e-19713623150NAC domain-containing protein 19
3swp_A2e-19713623150NAC domain-containing protein 19
3swp_B2e-19713623150NAC domain-containing protein 19
3swp_C2e-19713623150NAC domain-containing protein 19
3swp_D2e-19713623150NAC domain-containing protein 19
4dul_A2e-19713620147NAC domain-containing protein 19
4dul_B2e-19713620147NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00123DAPTransfer from AT1G02250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171727.21e-120NAC domain containing protein 5
SwissprotO819141e-121NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A087HK740.0A0A087HK74_ARAAL; Uncharacterized protein
STRINGA0A087HK740.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.11e-120NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]