PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40911.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TCP
Protein Properties Length: 405aa    MW: 43226.4 Da    PI: 6.8538
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40911.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.24.2e-40561984105
         TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 
                  k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++             
  KFK40911.1  56 TKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpsksvplygalgl 154
                 699****************************************************************99988888888888655557777778888888 PP

         TCP  89 .................................kaaksaakskksqksaa 105
                                                  +      +++ +q+ ++
  KFK40911.1 155 thhhhqydeqggafgahstpllgfhhhlqqqhhQ------NQNLNQRLTT 198
                 8877778888888887776666666432222110......2222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-4359233IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41160114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDLSDVRNND GAAARGGSRQ LIDASLSIVP RSTSLEDAAL TTTSSAATAT TSGVLTKRST  60
KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IVAATGTGTI  120
PANFSSLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHHHQ YDEQGGAFGA HSTPLLGFHH  180
HLQQQHHQNQ NLNQRLTTNQ LDQAPAETIP GPDGENFSRK RYRSVDLSKE NDDEKQNEDK  240
SFKESETPSA GAAPMWAVAP ATSRPTAGNT YWMLPVQTAA GNQPAAMESS SNTNRAQMWP  300
FVNSAGAGPA TQFMAGPGFS FPMDQYRGSP LQLGSFLAQP QQPTQNLGLS MPDSNLGMLA  360
ALNGGYSRGG NANAEQGNNA VEHKKKQAQQ SDPDDDSREE NSNSS
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0791312e-69AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBankAC0796042e-69AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBankAY0813442e-69AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBankBT0084932e-69BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBankCP0026842e-69CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113333.10.0PREDICTED: transcription factor TCP8
SwissprotQ9C5180.0TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A087HFK90.0A0A087HFK9_ARAAL; Uncharacterized protein
STRINGA0A087HFK90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-150TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]