PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 291aa    MW: 33290.3 Da    PI: 10.2831
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40028.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.6e-1518109194
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 ffkvl  +d +++    +p + +++ +++   s+++++++e+grsW+v++  +k+++  ++ ++GW+ Fv++n L + + ++F ++g+++f+l +
  KFK40028.1  18 FFKVLQGADISSEIKRAIPHDLVKTLSEN-DLSRKMKIKTEWGRSWKVEI--SKNPRFyFMEKAGWETFVRENFLGDSELLTFIHKGKMRFTLII 109
                 8999999999999999*******888555.5889****************..******555569*********************9999997765 PP

2B338.91.5e-122092861294
                 HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  ++ l +p +fa++h+++  + ++ ++ d e  +sW+v +   k+   +v+++GW + vk+  L+ g ++ F++++ +e  l++
  KFK40028.1 209 YLNFLAIPVSFAKDHMQE--GRTMFKIHDsEMKKSWDVAY--VKRNTNTVFSAGWIQLVKEYPLRLGNTCKFTVINPTE--LRL 286
                 457799*********744..5668899995666*******..7777889************************876444..344 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-1614114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-1618118IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-1418109IPR003340B3 DNA binding domain
SMARTSM010197.7E-1718113IPR003340B3 DNA binding domain
PROSITE profilePS5086312.5218113IPR003340B3 DNA binding domain
CDDcd100179.55E-1418111No hitNo description
SuperFamilySSF1019364.32E-16194289IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-16195290IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.392198291IPR003340B3 DNA binding domain
SMARTSM010192.1E-10201287IPR003340B3 DNA binding domain
CDDcd100171.99E-8201277No hitNo description
PfamPF023624.6E-9208284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKNVDFLSCK EEREQDGFFK VLQGADISSE IKRAIPHDLV KTLSENDLSR KMKIKTEWGR  60
SWKVEISKNP RFYFMEKAGW ETFVRENFLG DSELLTFIHK GKMRFTLIIY NKDGKEMLQP  120
RQAAPFLASS SRIKTEDVKK EEVVVSSELS SLDPVTPAAE SNGRRKLNFG KMKAEESQSS  180
KRAKTKFRDS AGASSSSATG FTISIKKSYL NFLAIPVSFA KDHMQEGRTM FKIHDSEMKK  240
SWDVAYVKRN TNTVFSAGWI QLVKEYPLRL GNTCKFTVIN PTELRLDVLK P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873422.11e-117predicted protein
SwissprotQ9LXE11e-101REM23_ARATH; B3 domain-containing protein REM23
TrEMBLA0A087HD260.0A0A087HD26_ARAAL; Uncharacterized protein
STRINGAl_scaffold_0006_8791e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.16e-94B3 family protein