PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39192.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TCP
Protein Properties Length: 248aa    MW: 26461.6 Da    PI: 9.826
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39192.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.62.2e-38322093118
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 
                 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s  +++++++             
  KFK39192.1  32 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSIRGNTNNISsttctlsssldhk 129
                 79*************************************************************99999777.334444444344445667777777777 PP

         TCP  89 .................................................kaaksaa.kskksqksaasalnlakesraka 118
                                                                    a++++  +++ q+++ +al ++++++++a
  KFK39192.1 130 pllgsspfilgkrvradedkeetmgsfatpagfwavparpdfgqvwsfaTGAPQEMfLQQQHQQQQGAALFVHQQQQQQA 209
                 77778888888888887777888888888888888888888888888773333333355555555554555555555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3437194IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8923791IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSNNIEGVMI TNGAITQQQQ QSSEGGGGAL VVKKPPAKDR HSKVDGRGRR IRMPIICAAR  60
VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTASVSIRG NTNNISSTTC  120
TLSSSLDHKP LLGSSPFILG KRVRADEDKE ETMGSFATPA GFWAVPARPD FGQVWSFATG  180
APQEMFLQQQ HQQQQGAALF VHQQQQQQAA MGEASAARVG NYLPGHLNLL ASLSGGAPGS  240
GRREDDPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39192.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007014.11e-135transcription factor TCP7
RefseqXP_024007015.11e-135transcription factor TCP7
RefseqXP_024007016.11e-135transcription factor TCP7
RefseqXP_024007017.11e-135transcription factor TCP7
SwissprotQ9FMX21e-118TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A087HAP00.0A0A087HAP0_ARAAL; Uncharacterized protein
STRINGA0A087HAP00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-71TCP family protein