PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38868.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family SBP
Protein Properties Length: 181aa    MW: 21111.7 Da    PI: 10.0029
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38868.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.19.1e-4263138277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 Cqv++C+a+l+eak+yhrrh+vCevh+ka++++v+g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++
  KFK38868.1  63 CQVDRCAANLTEAKQYHRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDETKRSCRRRLAGHNERRRKSS 138
                 **************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375757.0E-551149IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.107.6E-3260124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.07760137IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-3862141IPR004333Transcription factor, SBP-box
PfamPF031102.3E-3163136IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEGQRTQRRG YLKEKATVSS LVEEEMENDM DEEEEDGGEE DKRRRMMERV RGPITDRVPS  60
RLCQVDRCAA NLTEAKQYHR RHRVCEVHAK ASAATVAGVR QRFCQQCSRF HELPEFDETK  120
RSCRRRLAGH NERRRKSSGE SFGEGSGRRG FSGQLIQTQE RNRVDMKLPM TNSSLKRPQI  180
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3961136984squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00359DAPTransfer from AT3G15270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0037140.0BT003714.1 Arabidopsis thaliana At3g15270 mRNA, complete cds.
GenBankAK1186110.0AK118611.1 Arabidopsis thaliana At3g15270 mRNA for squamosa promoter binding protein-like 5, putative, complete cds, clone: RAFL19-86-N19.
GenBankAJ2429600.0AJ242960.1 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 5, (SPL5 gene).
GenBankAJ0116100.0AJ011610.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298553.11e-115hypothetical protein CARUB_v10014636mg, partial
SwissprotQ9S7581e-110SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBLA0A087H9R61e-130A0A087H9R6_ARAAL; Squamosa promoter-binding-like protein
STRINGAT3G15270.11e-108(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-87squamosa promoter binding protein-like 5