PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37841.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 325aa    MW: 36589 Da    PI: 6.9136
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37841.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.47.9e-55191451128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdee++++yLk+kv ++++++  +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ kg l
  KFK37841.1  19 LPPGFRFHPTDEEIITHYLKEKVFNTRFTA-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKGCL 116
                 79*************************999.78***************8888899***************************************9**** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kktLvfy+grapkgekt+Wvmheyrl
  KFK37841.1 117 VGMKKTLVFYRGRAPKGEKTNWVMHEYRL 145
                 ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-6216171IPR003441NAC domain
PROSITE profilePS5100558.43219170IPR003441NAC domain
PfamPF023658.4E-2920145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVEEGGVVVN QGREEVVDLP PGFRFHPTDE EIITHYLKEK VFNTRFTAAA IGQADLNKNE  60
PWDLPKIAKM GEKEFYFFCQ RDRKYPTGMR TNRATVSGYW KATGKDKEIF RGKGCLVGMK  120
KTLVFYRGRA PKGEKTNWVM HEYRLDGKYS YHNLPKSARD EWVVCRVFHK NAPTTTTTTN  180
QLSRIDSLDN IDHLLDFSSL PNLIDPAFLG QPGPSFSGAV QNHNLKPVLH HPTTAPIDNT  240
YLNFPYHSVP NSGYGLGYGT GSGNNNNKGM VKLEHSFVSV SQDTGLSSDV NATATPEISS  300
YPVMMNPTAN TYDDLDDFLW DDYTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-501717215167NO APICAL MERISTEM PROTEIN
1ut4_B4e-501717215167NO APICAL MERISTEM PROTEIN
1ut7_A4e-501717215167NO APICAL MERISTEM PROTEIN
1ut7_B4e-501717215167NO APICAL MERISTEM PROTEIN
3swm_A4e-501717218170NAC domain-containing protein 19
3swm_B4e-501717218170NAC domain-containing protein 19
3swm_C4e-501717218170NAC domain-containing protein 19
3swm_D4e-501717218170NAC domain-containing protein 19
3swp_A4e-501717218170NAC domain-containing protein 19
3swp_B4e-501717218170NAC domain-containing protein 19
3swp_C4e-501717218170NAC domain-containing protein 19
3swp_D4e-501717218170NAC domain-containing protein 19
4dul_A4e-501717215167NAC domain-containing protein 19
4dul_B4e-501717215167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3616230.0AF361623.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
GenBankAY0818340.0AY081834.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187056.10.0NAC domain containing protein 46
SwissprotQ9SQQ60.0NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A087H6T90.0A0A087H6T9_ARAAL; Uncharacterized protein
STRINGA0A087H6T90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.10.0NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]