PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37335.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 262aa    MW: 27269.6 Da    PI: 8.0793
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37335.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.75.2e-40351351100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++apyf +eq ++ fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdP+yG+v++i++lqqq+ +l++e+++l+
  KFK37335.1  35 PCGACKFLRRKCVPGCIFAPYFDSEQgSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQSEVSYLQ 133
                 7***********************998899******************************************************************999 PP

      DUF260  99 ee 100
                 ++
  KFK37335.1 134 AH 135
                 86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.86634136IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-3935133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSGGGNTITA VGSGGGGGCG GGSSSGGGGG GGGGPCGACK FLRRKCVPGC IFAPYFDSEQ  60
GSAYFAAVHK VFGASNVSKL LLHIPVHRRS DAVVTICYEA QARIRDPIYG CVAHIFALQQ  120
QVVNLQSEVS YLQAHLASLE LPQPQTRPPP LPQPQPQPQP LFFTPPPPLS ITDLPASVSP  180
LPSTYDLASI FDHQTTSSSS WATQQRRFVD PRHQYGVPST SSGVGLGGGN SELQALAHEL  240
LHRQGSPPPA ATDDSPSRSM SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11222SGGGGGCGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508173.11e-144PREDICTED: LOB domain-containing protein 18
SwissprotO221311e-125LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A087H5D30.0A0A087H5D3_ARAAL; Uncharacterized protein
STRINGfgenesh2_kg.4__2737__AT2G45420.11e-132(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-103LOB domain-containing protein 18