PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37334.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 213aa    MW: 23595.7 Da    PI: 6.295
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37334.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.2e-3817116199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+Cv+apyf a+q + +fa+vhk+FGasn +k+l +lp ++r da+ +l yeA ar+rdPvyG+vg++++lq+q+++l+aela+++
  KFK37334.1  17 PCGACKFLRRKCVKGCVFAPYFDADQgTTRFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLSYEALARVRDPVYGSVGHLFSLQHQVMNLQAELAHVQ 115
                 7*************************88********************************************************************998 PP

      DUF260  99 e 99 
                 +
  KFK37334.1 116 A 116
                 6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.99916118IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3717115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MMTENLNGGG RGGEEGPCGA CKFLRRKCVK GCVFAPYFDA DQGTTRFAAV HKVFGASNAS  60
KMLLRLPLHK RLDAVVTLSY EALARVRDPV YGSVGHLFSL QHQVMNLQAE LAHVQACLST  120
FQHFSLEPSQ QMHQPPFDMA HTNEFPMEPS NLDVVWEEEQ LPQVGAEDNG EFQELSMQFV  180
SRACSCPSSS FNVSSFFYRD VTTNASAAFR YGA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397722.13e-97hypothetical protein EUTSA_v10001778mg
SwissprotO221326e-92LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A087H5D21e-160A0A087H5D2_ARAAL; Uncharacterized protein
STRINGAl_scaffold_0004_32264e-91(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-93LOB domain-containing protein 19