PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 605aa    MW: 68221.5 Da    PI: 9.0635
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35020.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-141568248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                     + W+t+E++ll++av+++G+++W+++a +++       +++t+ +c++++++++
       KFK35020.1 15 QTWSTWEELLLACAVHRHGTNSWDSVAVEIQkrnstlhNTLTAFDCRHKYHNLK 68
                     68**************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-61367IPR009057Homeodomain-like
SMARTSM007176.0E-91370IPR001005SANT/Myb domain
PROSITE profilePS500906.4111368IPR017877Myb-like domain
SuperFamilySSF466893.9E-71370IPR009057Homeodomain-like
PfamPF002497.2E-141568IPR001005SANT/Myb domain
CDDcd001673.35E-81668No hitNo description
SMARTSM002972.9E-9230341IPR001487Bromodomain
SuperFamilySSF473701.24E-14240336IPR001487Bromodomain
CDDcd043691.94E-12241336No hitNo description
Gene3DG3DSA:1.20.920.101.3E-12244339IPR001487Bromodomain
PfamPF004393.6E-9247326IPR001487Bromodomain
PROSITE profilePS5001411.767249322IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.3E-12407415IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MAKPENSKTC PEKQQTWSTW EELLLACAVH RHGTNSWDSV AVEIQKRNST LHNTLTAFDC  60
RHKYHNLKQR FSPESDDGET ISEISSVPWL DELRKLRVDE LRRELERYDL SISSLQSKVE  120
RLEEEREKSL KETIPDLDKI EPDPTRTGSE NVNRDRKIIE PVNEEPNRIG EDSCRGSCES  180
VEKESKEVND SPEFIDESKE TSDVQSSASL SRKETTIEQN QMDNVDQSLT VDKIFVESRP  240
LIDFIEILQS HPIGSHFSRR LQNQLQETLE YEKIIKQHLD FEMIRTRVEE GYYGSSKSKF  300
FRDLLLLINN VSVFYGEGTS EFVSAKQLNQ LIKKEMMMSV KIPKQTSTLK EECLVTSKEE  360
VTTVSSLKPK MPVPIIACRK RSSVAGRSSV SVNEPFKKKT KIVPTVDEKQ VSEDEEEEEE  420
EISDKDEEPI VSKKMVKGRT TSTAKKVESR NVKTSLNAGL SSKGRTSNDS SEQKKSDQEK  480
KGNNANSGSK KQSVATFLKR MKGVSSTETV IETVKGDSSN GKRGVEQRKS NSKNDKVDAG  540
KQLAGQKRST GKKATTEKGS PAKKNTSTAS KKGPAPFTPM VAKRGSEASE KEVGSSNRPK  600
KRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879681.10.0uncharacterized protein LOC9312517 isoform X1
TrEMBLA0A087GYR80.0A0A087GYR8_ARAAL; Uncharacterized protein
STRINGA0A087GYR80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein