PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32262.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 148aa    MW: 16405.2 Da    PI: 10.309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32262.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00123355123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F++   L  H  +H
  KFK32262.1 33 FACKTCNKEFPSFQALGGHRASH 55
                78**********99999998887 PP

2zf-C2H212.30.00057799123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++Cp+Cg  F     L  H+r+H
  KFK32262.1 77 HECPICGAEFAVGQALGGHMRKH 99
                79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.57E-83199No hitNo description
PfamPF139126.4E-133257IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3693360IPR007087Zinc finger, C2H2
SMARTSM003550.233355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-477101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.36777104IPR007087Zinc finger, C2H2
PfamPF139122.9E-1077101IPR007087Zinc finger, C2H2
SMARTSM003550.0637799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEKEREMEMI NKMASCLILL SKTHQNDTKS RVFACKTCNK EFPSFQALGG HRASHRRSAA  60
LEGHAPPSPK RVKPVKHECP ICGAEFAVGQ ALGGHMRKHR GRDRSLAVAP VTMKKSGGGY  120
GKRVLCLDLN LTPLENEDLK LELGRLIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071842e-95AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence.
GenBankCP0026852e-95CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankBT0293302e-95BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409904.15e-98hypothetical protein EUTSA_v10017375mg
SwissprotQ424104e-38ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A087GQW01e-106A0A087GQW0_ARAAL; Uncharacterized protein
STRINGBra011931.1-P5e-93(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-92C2H2 family protein