PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32169.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 385aa    MW: 44315 Da    PI: 7.1205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32169.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002881103323
                 ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                 C+   Cgk+F + s L++H   H
  KFK32169.1  81 CSyeGCGKTFFDASALRKHSHIH 103
                 77779**************7766 PP

2zf-C2H213.10.0003108132123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y+C+   C k F ++s LkrH   H
  KFK32169.1 108 YVCHyeGCRKKFLDSSKLKRHFLIH 132
                 9********************8877 PP

3zf-C2H221.65.5e-07138162123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++Cp   Cgk Fs   nL++H++tH
  KFK32169.1 138 FVCPheGCGKAFSLDFNLRSHMKTH 162
                 89**********************9 PP

4zf-C2H213.40.00022168193123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 + Cp   Cgk++ + + Lk+H    H
  KFK32169.1 168 HICPysGCGKRYAHEYKLKNHVAAyH 193
                 68*******************87666 PP

5zf-C2H212.90.00032231256123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y Cp   C k + + + Lk H+++ H
  KFK32169.1 231 YACPyeGCEKAYIHEYKLKLHLKReH 256
                 89*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-1474105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004479103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15779108IPR007087Zinc finger, C2H2
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576672.54E-782132No hitNo description
Gene3DG3DSA:3.30.160.601.4E-13106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.015108132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.05108137IPR007087Zinc finger, C2H2
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576677.75E-14119173No hitNo description
Gene3DG3DSA:3.30.160.603.2E-19129163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695138167IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4138162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-7164190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0074168193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-5226254No hitNo description
Gene3DG3DSA:3.30.160.606.7E-9227253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.016231258IPR007087Zinc finger, C2H2
SMARTSM003550.012231256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEHHNYPYHN PFERRPILKS KAPAIKWIKE WVPQDTVATG GKCYLRKWVT EETLKRMKEK  60
EKDPDVPEPE PEPTTEVLFL CSYEGCGKTF FDASALRKHS HIHGERQYVC HYEGCRKKFL  120
DSSKLKRHFL IHTGARDFVC PHEGCGKAFS LDFNLRSHMK THSQENYHIC PYSGCGKRYA  180
HEYKLKNHVA AYHEKNVAGE TPKYTPPAEK VTRTVKTPAA VYGSASSDRP YACPYEGCEK  240
AYIHEYKLKL HLKREHPGHL LEENAENPTP NKHNSNDRNV LDEGSDQDVY RKHASNGKSQ  300
THKQLSRAKP NTKTPPAKAG KKGSTSSPAK VRSAQRQWQA KESFGEGERE EDSEETEEDR  360
ENVDDGWRFG ENNEDDDDEE TEDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-33811928119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026871e-157CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankAB0731621e-157AB073162.1 Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F8H12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013702531.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L30.0Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A087GQL70.0A0A087GQL7_ARAAL; Uncharacterized protein
STRINGBra035726.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.10.0C2H2 family protein