PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31989.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 340aa    MW: 39071.4 Da    PI: 6.6105
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31989.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.6e-53111401129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL++++k     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + +
  KFK31989.1  11 VPPGFRFHPTDEELLHYYLKKKISYHKFEM-EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRN-S 107
                 69****************************.99**************964444222455*************************************9.8 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +++g++ktLvfykgrap+g+ktdW+mheyrle
  KFK31989.1 108 YKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 140
                 999****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-599162IPR003441NAC domain
PROSITE profilePS5100557.78411162IPR003441NAC domain
PfamPF023658.7E-2812139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEMGSSSNGG VPPGFRFHPT DEELLHYYLK KKISYHKFEM EVIREVDLNK LEPWDLQERC  60
KIGSTPQNEW YFFSHKDRKY PTGSRTNRAT HAGFWKATGR DKCIRNSYKK IGMRKTLVFY  120
KGRAPHGQKT DWIMHEYRLE DVDDPQANPS EDGWVVCRVF MKKNLFKVVN EGGSSMTSTD  180
QYNHDASNNN NTLQARSFMH RDSPYQLVRN HGATTFELNK PDLDLHHYPP IFHKSTSLGF  240
DYTSGLPRDC ESAANEGLQY QQACELGLEV GNCETVASHN HQQGLGEWAM LDRLVTCHME  300
NDDSSRGINF EDGNNNSSSV VQPVPESNQL SLRSEMDFWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-511116417167NO APICAL MERISTEM PROTEIN
1ut4_B3e-511116417167NO APICAL MERISTEM PROTEIN
1ut7_A3e-511116417167NO APICAL MERISTEM PROTEIN
1ut7_B3e-511116417167NO APICAL MERISTEM PROTEIN
3swm_A3e-511116420170NAC domain-containing protein 19
3swm_B3e-511116420170NAC domain-containing protein 19
3swm_C3e-511116420170NAC domain-containing protein 19
3swm_D3e-511116420170NAC domain-containing protein 19
3swp_A3e-511116420170NAC domain-containing protein 19
3swp_B3e-511116420170NAC domain-containing protein 19
3swp_C3e-511116420170NAC domain-containing protein 19
3swp_D3e-511116420170NAC domain-containing protein 19
4dul_A3e-511116417167NAC domain-containing protein 19
4dul_B3e-511116417167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1336810.0AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134191.10.0PREDICTED: protein BEARSKIN2
SwissprotQ9SV870.0BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A087GQ370.0A0A087GQ37_ARAAL; Uncharacterized protein
STRINGA0A087GQ370.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52132648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.10.0NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]