PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31456.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 246aa    MW: 28709.8 Da    PI: 4.2838
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31456.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.84.2e-27680174
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrk 74
                lppGfrFhPtdeel+++yLk+kveg ++el evi+e+d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g+r+
  KFK31456.1  6 LPPGFRFHPTDEELIDYYLKRKVEGLEIEL-EVIPEIDLYKFDPWELPeKsFLPNRDMEWFFFCSRDKKYPNGDRT 80
                79****************************.99**************95334556888***************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-383113IPR003441NAC domain
PROSITE profilePS5100525.3226161IPR003441NAC domain
PfamPF023652.9E-12772IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGSSCLPPGF RFHPTDEELI DYYLKRKVEG LEIELEVIPE IDLYKFDPWE LPEKSFLPNR  60
DMEWFFFCSR DKKYPNGDRT SWIMHEYRLC DDDSSQGLQH FKGAYVLCRV AKKNEIKTNS  120
KIRKFPSEQT FVSGESSGYS SRVTSPSRDE TMSFVNPVSS QPDSSNIWIS PDFILDSSKD  180
YPQIQDVASE YFQDFDFPVI DSQNMDFPVT TMYANVDQNM DEYRQTGYWA NCEYDQTGLF  240
GYSAFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-27611417166NO APICAL MERISTEM PROTEIN
1ut4_B1e-27611417166NO APICAL MERISTEM PROTEIN
1ut7_A1e-27611417166NO APICAL MERISTEM PROTEIN
1ut7_B1e-27611417166NO APICAL MERISTEM PROTEIN
3swm_A1e-27611420169NAC domain-containing protein 19
3swm_B1e-27611420169NAC domain-containing protein 19
3swm_C1e-27611420169NAC domain-containing protein 19
3swm_D1e-27611420169NAC domain-containing protein 19
3swp_A1e-27611420169NAC domain-containing protein 19
3swp_B1e-27611420169NAC domain-containing protein 19
3swp_C1e-27611420169NAC domain-containing protein 19
3swp_D1e-27611420169NAC domain-containing protein 19
4dul_A1e-27611417166NAC domain-containing protein 19
4dul_B1e-27611417166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31456.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937782e-77AB493778.1 Arabidopsis thaliana At5g46590 mRNA for hypothetical protein, partial cds, clone: RAAt5g46590.
GenBankBT0203052e-77BT020305.1 Arabidopsis thaliana At5g46590 gene, complete cds.
GenBankBT0205552e-77BT020555.1 Arabidopsis thaliana At5g46590 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870568.11e-141NAC domain-containing protein 86
SwissprotQ9LS241e-132NAC96_ARATH; NAC domain-containing protein 96
TrEMBLA0A087GNK40.0A0A087GNK4_ARAAL; Uncharacterized protein
STRINGA0A087GNK40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-135NAC domain containing protein 96
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]