PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 187aa    MW: 21284.9 Da    PI: 5.4216
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25000.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601192.7e-3771071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+ dCv+apyf  eq +++fa+vhk+FGasnv+k l +lp ++r+da+ ++ yeA  r+ dPvyG+v++i++l+qq+ +l++e++ l+
  KFK25000.1   7 SCGACKFLRRKCNIDCVFAPYFSYEQaSSHFAAVHKVFGASNVSKHLLHLPLHQRNDAAITISYEALSRMCDPVYGCVAHIFALHQQVVSLQEEIEFLG 105
                 6***********************9978*******************************************************************9998 PP

      DUF260  99 ee 100
                 ++
  KFK25000.1 106 NQ 107
                 87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0456108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVAHGSSCGA CKFLRRKCNI DCVFAPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPLHQ  60
RNDAAITISY EALSRMCDPV YGCVAHIFAL HQQVVSLQEE IEFLGNQMGN FSYSTQSRSE  120
HNNMPEFQNQ MTMDTTSFVV DESLMNNKEL VVDGTNCCEG FFMNPEDVLV DHPWLQNMDY  180
YYNAPQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873236.11e-107predicted protein
SwissprotQ9LHS81e-105LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A087G5481e-141A0A087G548_ARAAL; Uncharacterized protein
STRINGAl_scaffold_0006_5271e-107(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-106LOB domain-containing protein 33