PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Data Source (TFext)
The deadline for species collection was Jun. 20th, 2019. 52 newly sequenced species were collected. For these species, gene sets annotated by corresponding genome projects are used.

Data source and version of sequences used
Species Common name Genome assembly Gene Anotation PubMed ID
Indian licoriceAbrus_2018 (GCA_003935025.1)NCBI(v100)-
-ASM278626v1 (GCA_002786265.1)NCBI28902843
Garden asparagusAspof.V1Phytozome(v1.1)29093472
-v2.0Phytozome(v2.1)28428306
-AHAU_CSS_1 (GCA_004153795.1)NCBI(v100)30642496
-ASM227188v2 (GCA_002271885.2)NCBI30336638
Scotch bonnetASM227189v2 (GCA_002271895.2)NCBI29089032
-Cbr_1.0 (GCA_003427395.1)NCBI30007417
Quinoav1.0Phytozome(v1.0)28178233
-v5Phytozome(v5.2.3.2)28484037
-v1.0Kazusa(v1.1)30689773
-ASBRC_Ckan_1.0 (GCA_003546025.1)NCBI30626928
Satsuma orangeCUMW_v1.0 (GCA_002897195.1)NCBI29259619
Arabica coffeeCara_1.0 (GCA_003713225.1)NCBI(v100)-
-Ceug_1.0 (GCA_003713205.1)NCBI(v100)-
JuteCCACVL1_1.0 (GCA_001974805.1)EnsemblPlants(v43)28134914
Boston marrowCmax_1.0 (GCA_002738345.1)NCBI(v100)28917590
Canada pumpkinCmos_1.0 (GCA_002738365.1)NCBI(v100)28917590
Field pumpkinASM280686v2 (GCA_002806865.2)NCBI29112324
ArtichokeCcrdV1 (GCA_001531365.1)NCBI26786968
-ASM160598v2 (GCA_001605985.2)NCBI(v101)28258650
Guinea yamTDr96_F1_Pseudo_Chromosome_v1.0 (GCA_002240015.2)EnsemblPlants(v43)28927400
DurianDuzib1.0 (GCA_002303985.1)NCBI(v100)28991254
-Bedadeti_annotated (GCA_001884845.1)NCBI29896517
-Himp0.1 (GCA_002762385.1)NCBI-
-ASM216827v2 (GCA_002168275.2)NCBI(v100)-
Para rubber treeASM165405v1 (GCA_002003025.1)NCBI(v100)27108962
Japanese morning gloryAsagao_1.1 (GCA_001879475.1)NCBI(v100)27824041
South American air plantv1.0Phytozome(v1.1)29196618
Narrow-leaved blue lupineLupAngTanjil_v1.0 (GCA_001865875.1)EnsemblPlants(v43)27557478
-MC_HNAU_1.0 (GCA_002174775.1)NCBI28552780
Balsam pearASM199503v1 (GCA_900491585.1)NCBI(v100)28028039
-ASM337056v1 (GCA_003370565.1)NCBI-
-NIATTr2 (GCA_001879085.1)EnsemblPlants(v43)28536194
Wild olivev1.0Phytozome(v1.0)29078332
-Oryza_glumaepatula_v1.5 (GCA_000576495.1)EnsemblPlants(v43)29358651
-Oryza_nivara_v1.0 (GCA_000576065.1)EnsemblPlants(v43)29358651
Opium poppyASM357369v1 (GCA_003573695.1)NCBI(v100)30166436
-PanWU01x14_asm01 (GCA_002914805.1)NCBI-
Geanv1.0GDR(v1.0.a1)28541388
Plumv1.0GDR(v1.0.a1)30603097
GranadoASM220158v1 (GCA_002864125.1)NCBI29271050
Pearv1.0GDR(v1.0)24699266
Cork oakCorkOak1.0 (GCA_002906115.1)NCBI(v100)29786699
China rosev2.0GDR(v2.0)29713014
Japanese rosev1.0GDR(v1.0)29045613
Black raspberryv3.0GDR(v3.0)30107523
Bonfire salviaSspV1 (GCA_004379255.1)NCBI-
-TetSoc1 (GCA_002891735.1)NCBI29294063
-TorRG33x02_asm01 (GCA_002914845.1)NCBI30175293
-ASM349008v1 (GCA_003490085.1)NCBI29922311
Wild emmer wheatWEWSeq_v.1.0 (GCA_002162155.1)EnsemblPlants(v43)28684525